Directory of CCG Ubuntu NGS server documents

Table of Contents

System notes

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• System notes
• Current backup strategy
• Stacks setup and update notes
• Galaxy Admin notes
• PostgreSQL database setup for Galaxy notes
• Apps installed on the CCG Ubuntu NGS Server

Tutorials

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• The full pipeline From RAD seq Illumina reads to a Structure chart
• Illumina Rad seq processing notes
• Simison Stacks R1+R2 Concat experiment (only available inside CAS domain)
• R2 SNP isolation for Stacks (only available inside CAS domain)
• Combining RAD Tag Illumina data from different runs
• Using the GUI version of Structure on the CCG UBuntu NGS server
• Creating a graphical display of your Structure results using Distruct on the CCG UBuntu NGS server (Coming soon)
• Installing and using Migrate-N
• Using Bayescan
• An HTML template for creating your own CCG Ubuntu notes (right-click and "save link as")

CCG Ubuntu information

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• The current Google Calendar for the CCG Ubuntu server
• The CCG Galaxy NGS web tools website (only available inside CAS domain)
• The CCG Stacks database interface (only available inside CAS domain)
• RStudio IDE (only available inside CAS domain)